Implementation gap report
Deep-PK: deep learning for small molecule pharmacokinetic and toxicity prediction
Yoochan Myung et al. · Nucleic Acids Research · 2024. Citation count: 239 from OpenAlex cited_by_count, snapshot 2026-05-26.
Specified
3
Partial
2
Missing
2
Contract files
9
Specified
Paper metadata and citation snapshot are available from OpenAlex for 2024-04-18.
The work matches the ADMET support boundary used for OpenAlgo hub triage.
Template estimate: fingerprint descriptor classification.
Partial
Dataset and metric extraction still require OpenAlgo parser review before any reproduction claim.
Generated code can expose runnable scaffolding, but paper-specific hyperparameters must be confirmed by a reviewer.
Missing
No copyrighted PDF or full-paper text is stored in the hub manifest.
Official benchmark assets, split files, and random seed policy must be attached before benchmark reproduction can be claimed.
Repository
openalgo-repro-deep-pk-deep-learning-for-small-molecule-pharmacokinetic-and-toxicity-prediction
Generated repository contract is complete; GitHub repository publication is pending.
- Repository status
- Not published
- Contract status
- complete
Repository contract
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"title": "Deep-PK: deep learning for small molecule pharmacokinetic and toxicity prediction",
"doi": "10.1093/nar/gkae254",
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"repositoryName": "openalgo-repro-deep-pk-deep-learning-for-small-molecule-pharmacokinetic-and-toxicity-prediction",
"repositoryDescription": "OpenAlgo-generated reproducibility scaffold and gap report for Deep-PK: deep learning for small molecule pharmacokinetic and toxicity prediction",
"templateFamily": "fingerprint_descriptor_classification",
"modelFamily": "classical_ml",
"validationStatus": "execution_only",
"validationLabel": "Execution only",
"gapCounts": {
"specified": 3,
"partial": 2,
"missing": 2
},
"citationSource": "OpenAlex cited_by_count",
"citationSnapshotAt": "2026-05-26T00:00:00.000-07:00",
"requiredFiles": [
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"publicationNotice": "This repository is OpenAlgo-generated and is not an official author implementation unless explicitly stated by the paper authors.",
"source": "https://openalgo.com"
}Corpus decision
Accepted from the OpenAlex query snapshot after QSAR/molecular ML term filtering, then ranked by citation count.
Source queries: ADMET prediction machine learning; cheminformatics machine learning molecular property; SMILES representation learning property prediction.